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| H | Kampala City Council FC | - | Al Merrikh SC | 0:1 | ||
| R | Al Merrikh SC | - | Kampala City Council FC | 1:1 | ||
| H: 17.04.2009 15:00 | R: 02.05.2009 19:00 | Sieger: Al Merrikh SC | ||||
| H | Kano Pillars | - | Al Ahly SC | 1:1 | ||
| R | Al Ahly SC | - | Kano Pillars | 2:2 | ||
| H: 18.04.2009 17:00 | R: 02.05.2009 19:30 | Sieger: Kano Pillars | ||||
| H | Djoliba AC | - | ZESCO United | 0:0 | ||
| R | ZESCO United | - | Djoliba AC | 2:1 | ||
| H: 18.04.2009 17:00 | R: 02.05.2009 15:00 | Sieger: ZESCO United | ||||
| H | Al Ahly Tripolis | - | Étoile du Sahel | 0:0 | ||
| R | Étoile du Sahel | - | Al Ahly Tripolis | 2:0 | ||
| H: 18.04.2009 19:00 | R: 02.05.2009 18:00 | Sieger: Étoile du Sahel | ||||
| H | TP Mazembe | - | Ittihad Khémisset | 1:0 | ||
| R | Ittihad Khémisset | - | TP Mazembe | 0:0 | ||
| H: 19.04.2009 15:30 | R: 02.05.2009 18:00 | Sieger: TP Mazembe | ||||
| H | CD 1º de Agosto | - | Al Hilal Omdurman | 3:1 | ||
| R | Al Hilal Omdurman | - | CD 1º de Agosto | 2:0 | ||
| H: 19.04.2009 17:00 | R: 03.05.2009 19:00 | Sieger: Al Hilal Omdurman | ||||
| H | Heartland FC | - | Coton Sport Garoua | 2:1 | ||
| R | Coton Sport Garoua | - | Heartland FC | 1:1 | ||
| H: 19.04.2009 17:00 | R: 02.05.2009 16:30 | Sieger: Heartland FC | ||||
| H | ASEC Mimosas | - | Monomotapa United | 1:0 | ||
| R | Monomotapa United | - | ASEC Mimosas | 2:0 | ||
| H: 19.04.2009 18:00 | R: 03.05.2009 15:00 | Sieger: Monomotapa United | ||||
