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| 20.09.2016 | 15:30 | NK Veli | - | Dinamo Zagreb | 0:5 | |
| 15:30 | NK Krk | - | Lokomotiva Zagreb | 1:2 | ||
| 15:30 | NK Samobor | - | HNK Cibalia | 1:6 n.V. | ||
| 15:30 | NK BSK Bijelo Brdo | - | NK Inter Zaprešić | 2:3 | ||
| 15:30 | NK Međimurje | - | HNK Šibenik | 1:2 n.V. | ||
| 21.09.2016 | 15:30 | NK Jalžabet | - | Hajduk Split | 0:6 | |
| 15:30 | NK Croatia Đakovo | - | HNK Rijeka | 0:3 | ||
| 15:30 | NK Varaždin | - | Slaven Belupo | 2:4 i.E. | ||
| 15:30 | NK Vukovar 91 | - | NK Osijek | 1:4 | ||
| 15:30 | NK Slavija Pleternica | - | RNK Split | 1:2 | ||
| 15:30 | Neretvanac Opuzen | - | NK Istra 1961 | 1:3 | ||
| 15:30 | NK Bjelovar | - | NK Zagreb | 4:0 | ||
| 15:30 | NK Solin | - | NK Zadar | 1:0 | ||
| 15:30 | NK Rudeš | - | NK GOŠK Dubrovnik | 3:0 | ||
| 15:30 | NK Libertas | - | NK Vinogradar | 2:5 | ||
| 15:30 | NK Novigrad | - | NK Zelina | 4:0 |
