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| 08.04.2017 | 10:15 | FK Fotbal Třinec | - | FK Varnsdorf | 4:0 (3:0) | |
| 10:15 | FK Pardubice | - | FK Ústí nad Labem | 2:1 (0:0) | ||
| 12:30 | Dynamo České Budějovice | - | Sigma Olomouc | 2:5 (0:2) | ||
| 16:30 | FC Sellier & Bellot Vlašim | - | SFC Opava | 1:2 (1:0) | ||
| 16:30 | FK MAS Táborsko | - | FK Baník Sokolov | 1:1 (0:0) | ||
| 16:30 | MFK Vítkovice | - | 1. SC Znojmo | 3:0 (3:0) | ||
| 16:30 | 1. SK Prostějov | - | Baník Ostrava | 0:2 (0:0) | ||
| 09.04.2017 | 10:15 | Viktoria Žižkov | - | MFK Frýdek-Místek, a.s. | 5:0 (3:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Sigma Olomouc | 21 | 15 | 4 | 2 | 43:13 | 30 | 49 |
| 2 |
|
Baník Ostrava | 21 | 13 | 6 | 2 | 34:15 | 19 | 45 |
| 3 |
|
SFC Opava | 21 | 11 | 5 | 5 | 39:23 | 16 | 38 |
| 4 |
|
Dynamo České Budějovice | 21 | 9 | 7 | 5 | 26:19 | 7 | 34 |
| 5 |
|
Viktoria Žižkov | 21 | 9 | 6 | 6 | 38:23 | 15 | 33 |
| 6 |
|
1. SC Znojmo | 21 | 9 | 6 | 6 | 36:31 | 5 | 33 |
| 7 |
|
FC Sellier & Bellot Vlašim | 21 | 9 | 5 | 7 | 34:28 | 6 | 32 |
| 8 |
|
FK MAS Táborsko | 21 | 7 | 7 | 7 | 27:32 | -5 | 28 |
| 9 |
|
MFK Frýdek-Místek, a.s. | 21 | 7 | 6 | 8 | 36:40 | -4 | 27 |
| 10 |
|
FK Varnsdorf | 21 | 7 | 4 | 10 | 28:31 | -3 | 25 |
| 11 |
|
FK Ústí nad Labem | 21 | 7 | 4 | 10 | 21:29 | -8 | 25 |
| 12 |
|
FK Fotbal Třinec | 21 | 6 | 6 | 9 | 30:35 | -5 | 24 |
| 13 |
|
FK Pardubice | 21 | 6 | 5 | 10 | 17:29 | -12 | 23 |
| 14 |
|
FK Baník Sokolov | 21 | 4 | 8 | 9 | 21:34 | -13 | 20 |
| 15 |
|
MFK Vítkovice | 21 | 5 | 2 | 14 | 22:35 | -13 | 17 |
| 16 |
|
1. SK Prostějov | 21 | 2 | 3 | 16 | 16:51 | -35 | 9 |
| Aufstieg | |
| Abstieg |
