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| 03.05.2017 | 18:10 | 1. SC Znojmo | - | Sigma Olomouc | 1:4 (0:3) | |
| 05.05.2017 | 18:00 | FK Ústí nad Labem | - | Viktoria Žižkov | 3:1 (1:0) | |
| 06.05.2017 | 10:15 | FK Pardubice | - | FK MAS Táborsko | 3:0 (1:0) | |
| 17:00 | Baník Ostrava | - | FK Varnsdorf | 1:0 (0:0) | ||
| 17:00 | MFK Frýdek-Místek, a.s. | - | FK Baník Sokolov | 1:1 (1:1) | ||
| 17:00 | 1. SK Prostějov | - | Dynamo České Budějovice | 0:3 (0:1) | ||
| 17:00 | FC Sellier & Bellot Vlašim | - | FK Fotbal Třinec | 5:0 (3:0) | ||
| 18:00 | SFC Opava | - | MFK Vítkovice | 2:1 (1:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Sigma Olomouc | 26 | 20 | 4 | 2 | 56:18 | 38 | 64 |
| 2 |
|
Baník Ostrava | 26 | 16 | 8 | 2 | 40:18 | 22 | 56 |
| 3 |
|
SFC Opava | 26 | 15 | 6 | 5 | 51:30 | 21 | 51 |
| 4 |
|
FC Sellier & Bellot Vlašim | 26 | 13 | 6 | 7 | 49:29 | 20 | 45 |
| 5 |
|
Dynamo České Budějovice | 26 | 11 | 8 | 7 | 34:27 | 7 | 41 |
| 6 |
|
1. SC Znojmo | 26 | 10 | 7 | 9 | 44:41 | 3 | 37 |
| 7 |
|
Viktoria Žižkov | 26 | 9 | 8 | 9 | 45:34 | 11 | 35 |
| 8 |
|
FK Pardubice | 26 | 8 | 8 | 10 | 27:31 | -4 | 32 |
| 9 |
|
FK Ústí nad Labem | 26 | 9 | 5 | 12 | 28:34 | -6 | 32 |
| 10 |
|
FK Fotbal Třinec | 26 | 8 | 7 | 11 | 35:44 | -9 | 31 |
| 11 |
|
FK MAS Táborsko | 26 | 8 | 7 | 11 | 30:41 | -11 | 31 |
| 12 |
|
FK Varnsdorf | 26 | 8 | 5 | 13 | 34:39 | -5 | 29 |
| 13 |
|
MFK Frýdek-Místek, a.s. | 26 | 7 | 8 | 11 | 40:48 | -8 | 29 |
| 14 |
|
FK Baník Sokolov | 26 | 5 | 11 | 10 | 26:40 | -14 | 26 |
| 15 |
|
MFK Vítkovice | 26 | 7 | 3 | 16 | 28:41 | -13 | 24 |
| 16 |
|
1. SK Prostějov | 26 | 2 | 3 | 21 | 18:70 | -52 | 9 |
| Aufstieg | |
| Abstieg |
