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| 13.05.2017 | 10:15 | FK Pardubice | - | FK Fotbal Třinec | 2:0 (1:0) | |
| 17:00 | 1. SK Prostějov | - | Viktoria Žižkov | 2:0 (0:0) | ||
| 17:00 | Baník Ostrava | - | FK Baník Sokolov | 3:0 (1:0) | ||
| 17:00 | FC Sellier & Bellot Vlašim | - | MFK Vítkovice | 4:1 (1:0) | ||
| 18:00 | SFC Opava | - | FK Varnsdorf | 4:2 (2:0) | ||
| 19:00 | FK Ústí nad Labem | - | Sigma Olomouc | 2:2 (1:2) | ||
| 14.05.2017 | 12:20 | MFK Frýdek-Místek, a.s. | - | 1. SC Znojmo | 0:3 (0:1) | |
| 17:00 | Dynamo České Budějovice | - | FK MAS Táborsko | 1:1 (1:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Sigma Olomouc | 28 | 21 | 5 | 2 | 59:20 | 39 | 68 |
| 2 |
|
Baník Ostrava | 28 | 17 | 9 | 2 | 45:20 | 25 | 60 |
| 3 |
|
SFC Opava | 28 | 17 | 6 | 5 | 58:33 | 25 | 57 |
| 4 |
|
FC Sellier & Bellot Vlašim | 28 | 15 | 6 | 7 | 56:30 | 26 | 51 |
| 5 |
|
Dynamo České Budějovice | 28 | 11 | 10 | 7 | 35:28 | 7 | 43 |
| 6 |
|
1. SC Znojmo | 28 | 11 | 7 | 10 | 47:42 | 5 | 40 |
| 7 |
|
FK Pardubice | 28 | 9 | 9 | 10 | 29:31 | -2 | 36 |
| 8 |
|
Viktoria Žižkov | 28 | 9 | 8 | 11 | 45:39 | 6 | 35 |
| 9 |
|
FK MAS Táborsko | 28 | 9 | 8 | 11 | 34:42 | -8 | 35 |
| 10 |
|
FK Ústí nad Labem | 28 | 9 | 6 | 13 | 31:39 | -8 | 33 |
| 11 |
|
FK Varnsdorf | 28 | 9 | 5 | 14 | 39:44 | -5 | 32 |
| 12 |
|
FK Fotbal Třinec | 28 | 8 | 7 | 13 | 36:49 | -13 | 31 |
| 13 |
|
MFK Frýdek-Místek, a.s. | 28 | 7 | 8 | 13 | 40:52 | -12 | 29 |
| 14 |
|
FK Baník Sokolov | 28 | 6 | 11 | 11 | 27:43 | -16 | 29 |
| 15 |
|
MFK Vítkovice | 28 | 7 | 4 | 17 | 31:47 | -16 | 25 |
| 16 |
|
1. SK Prostějov | 28 | 3 | 3 | 22 | 20:73 | -53 | 12 |
| Aufstieg | |
| Abstieg |
