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| 15.09.2016 | 18:00 | 1. SC Znojmo | - | MFK Vítkovice | 3:2 (1:0) | |
| 16.09.2016 | 18:00 | FK Ústí nad Labem | - | FK Pardubice | 2:0 (1:0) | |
| 17.09.2016 | 10:15 | FK Baník Sokolov | - | FK MAS Táborsko | 2:1 (2:0) | |
| 16:30 | Sigma Olomouc | - | Dynamo České Budějovice | 1:0 (0:0) | ||
| 17:00 | MFK Frýdek-Místek, a.s. | - | Viktoria Žižkov | 1:2 (0:1) | ||
| 17:00 | Baník Ostrava | - | 1. SK Prostějov | 3:0 (2:0) | ||
| 18:00 | SFC Opava | - | FC Sellier & Bellot Vlašim | 2:1 (0:0) | ||
| 18.09.2016 | 17:00 | FK Varnsdorf | - | FK Fotbal Třinec | 2:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Baník Ostrava | 7 | 5 | 2 | 0 | 15:4 | 11 | 17 |
| 2 |
|
Sigma Olomouc | 7 | 4 | 3 | 0 | 9:4 | 5 | 15 |
| 3 |
|
SFC Opava | 7 | 4 | 2 | 1 | 13:8 | 5 | 14 |
| 4 |
|
Dynamo České Budějovice | 7 | 4 | 2 | 1 | 7:3 | 4 | 14 |
| 5 |
|
1. SC Znojmo | 7 | 4 | 1 | 2 | 16:11 | 5 | 13 |
| 6 |
|
FK Varnsdorf | 7 | 3 | 3 | 1 | 9:5 | 4 | 12 |
| 7 |
|
Viktoria Žižkov | 7 | 2 | 4 | 1 | 13:10 | 3 | 10 |
| 8 |
|
FK Baník Sokolov | 7 | 2 | 4 | 1 | 9:10 | -1 | 10 |
| 9 |
|
MFK Frýdek-Místek, a.s. | 7 | 2 | 2 | 3 | 11:13 | -2 | 8 |
| 10 |
|
FK MAS Táborsko | 7 | 2 | 2 | 3 | 8:10 | -2 | 8 |
| 11 |
|
FK Ústí nad Labem | 7 | 2 | 1 | 4 | 10:13 | -3 | 7 |
| 12 |
|
MFK Vítkovice | 7 | 2 | 0 | 5 | 8:13 | -5 | 6 |
| 13 |
|
FC Sellier & Bellot Vlašim | 7 | 1 | 2 | 4 | 11:14 | -3 | 5 |
| 14 |
|
FK Fotbal Třinec | 7 | 1 | 2 | 4 | 12:16 | -4 | 5 |
| 15 |
|
FK Pardubice | 7 | 1 | 2 | 4 | 6:15 | -9 | 5 |
| 16 |
|
1. SK Prostějov | 7 | 0 | 2 | 5 | 4:12 | -8 | 2 |
| Aufstieg | |
| Abstieg |
