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| 26.05.2012 | 06:00 | Kyoto Sanga FC | - | Giravanz Kitakyushu | 1:0 (1:0) | |
| 27.05.2012 | 06:00 | Thespakusatsu Gunma | - | Matsumoto Yamaga | 0:0 (0:0) | |
| 06:00 | Gainare Tottori | - | Yokohama FC | 2:5 (1:3) | ||
| 06:00 | Avispa Fukuoka | - | Fagiano Okayama | 1:1 (1:1) | ||
| 06:00 | Oita Trinita | - | JEF United Chiba | 0:2 (0:1) | ||
| 09:00 | Tochigi SC | - | Tokyo Verdy | 3:2 (1:1) | ||
| 09:00 | FC Machida Zelvia | - | Mito HollyHock | 0:0 (0:0) | ||
| 09:00 | Shonan Bellmare | - | Tokushima Vortis | 0:0 (0:0) | ||
| 09:00 | Roasso Kumamoto | - | Montedio Yamagata | 2:1 (2:1) | ||
| 12:00 | FC Gifu | - | Ventforet Kofu | 0:3 (0:1) | ||
| 12:00 | Ehime FC | - | Kataller Toyama | 0:1 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Kyoto Sanga FC | 16 | 11 | 1 | 4 | 24:13 | 11 | 34 |
| 2 |
|
JEF United Chiba | 16 | 10 | 3 | 3 | 28:8 | 20 | 33 |
| 3 |
|
Montedio Yamagata | 16 | 10 | 3 | 3 | 23:16 | 7 | 33 |
| 4 |
|
Shonan Bellmare | 16 | 8 | 6 | 2 | 28:19 | 9 | 30 |
| 5 |
|
Ventforet Kofu | 16 | 8 | 5 | 3 | 22:13 | 9 | 29 |
| 6 |
|
Tokyo Verdy | 16 | 9 | 1 | 6 | 28:16 | 12 | 28 |
| 7 |
|
Oita Trinita | 16 | 8 | 4 | 4 | 23:15 | 8 | 28 |
| 8 |
|
Fagiano Okayama | 16 | 7 | 5 | 4 | 14:12 | 2 | 26 |
| 9 |
|
Tochigi SC | 16 | 7 | 4 | 5 | 20:16 | 4 | 25 |
| 10 |
|
Mito HollyHock | 16 | 7 | 4 | 5 | 14:12 | 2 | 25 |
| 11 |
|
Ehime FC | 16 | 6 | 5 | 5 | 23:15 | 8 | 23 |
| 12 |
|
Avispa Fukuoka | 16 | 5 | 6 | 5 | 23:21 | 2 | 21 |
| 13 |
|
Yokohama FC | 16 | 6 | 3 | 7 | 23:22 | 1 | 21 |
| 14 |
|
Giravanz Kitakyushu | 16 | 6 | 2 | 8 | 16:20 | -4 | 20 |
| 15 |
|
Matsumoto Yamaga | 16 | 5 | 4 | 7 | 9:15 | -6 | 19 |
| 16 |
|
Tokushima Vortis | 16 | 4 | 4 | 8 | 13:20 | -7 | 16 |
| 17 |
|
Roasso Kumamoto | 16 | 3 | 6 | 7 | 12:22 | -10 | 15 |
| 18 |
|
Gainare Tottori | 16 | 4 | 2 | 10 | 13:33 | -20 | 14 |
| 19 |
|
Kataller Toyama | 16 | 3 | 4 | 9 | 14:22 | -8 | 13 |
| 20 |
|
Thespakusatsu Gunma | 16 | 3 | 4 | 9 | 10:21 | -11 | 13 |
| 21 |
|
FC Machida Zelvia | 16 | 3 | 3 | 10 | 14:26 | -12 | 12 |
| 22 |
|
FC Gifu | 16 | 2 | 3 | 11 | 7:24 | -17 | 9 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
