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| 24.06.2012 | 11:00 | Mito HollyHock | - | Kyoto Sanga FC | 3:1 (2:1) | |
| 11:00 | Yokohama FC | - | Avispa Fukuoka | 1:1 (1:0) | ||
| 11:00 | Matsumoto Yamaga | - | Tochigi SC | 0:2 (0:1) | ||
| 11:00 | Kataller Toyama | - | Roasso Kumamoto | 0:2 (0:2) | ||
| 11:00 | FC Gifu | - | FC Machida Zelvia | 1:0 (0:0) | ||
| 11:00 | Fagiano Okayama | - | Ventforet Kofu | 1:1 (0:0) | ||
| 11:00 | Giravanz Kitakyushu | - | Oita Trinita | 0:2 (0:2) | ||
| 12:00 | Montedio Yamagata | - | Tokushima Vortis | 1:0 (0:0) | ||
| 12:00 | JEF United Chiba | - | Shonan Bellmare | 1:1 (1:1) | ||
| 12:00 | Ehime FC | - | Tokyo Verdy | 3:1 (1:1) | ||
| 12:30 | Thespakusatsu Gunma | - | Gainare Tottori | 1:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Montedio Yamagata | 21 | 12 | 5 | 4 | 32:21 | 11 | 41 |
| 2 |
|
JEF United Chiba | 21 | 12 | 4 | 5 | 35:13 | 22 | 40 |
| 3 |
|
Tokyo Verdy | 21 | 13 | 1 | 7 | 40:22 | 18 | 40 |
| 4 |
|
Shonan Bellmare | 21 | 11 | 7 | 3 | 36:24 | 12 | 40 |
| 5 |
|
Oita Trinita | 21 | 12 | 4 | 5 | 30:18 | 12 | 40 |
| 6 |
|
Ventforet Kofu | 21 | 10 | 7 | 4 | 31:19 | 12 | 37 |
| 7 |
|
Kyoto Sanga FC | 21 | 11 | 3 | 7 | 29:22 | 7 | 36 |
| 8 |
|
Fagiano Okayama | 21 | 9 | 7 | 5 | 19:17 | 2 | 34 |
| 9 |
|
Ehime FC | 21 | 8 | 7 | 6 | 30:22 | 8 | 31 |
| 10 |
|
Yokohama FC | 21 | 9 | 4 | 8 | 32:28 | 4 | 31 |
| 11 |
|
Mito HollyHock | 21 | 9 | 4 | 8 | 22:20 | 2 | 31 |
| 12 |
|
Tochigi SC | 21 | 8 | 5 | 8 | 27:25 | 2 | 29 |
| 13 |
|
Avispa Fukuoka | 21 | 6 | 9 | 6 | 27:25 | 2 | 27 |
| 14 |
|
Tokushima Vortis | 21 | 7 | 4 | 10 | 19:23 | -4 | 25 |
| 15 |
|
Giravanz Kitakyushu | 21 | 7 | 4 | 10 | 22:28 | -6 | 25 |
| 16 |
|
Matsumoto Yamaga | 21 | 6 | 6 | 9 | 13:22 | -9 | 24 |
| 17 |
|
Thespakusatsu Gunma | 21 | 6 | 5 | 10 | 15:23 | -8 | 23 |
| 18 |
|
Roasso Kumamoto | 21 | 5 | 8 | 8 | 18:27 | -9 | 23 |
| 19 |
|
FC Gifu | 21 | 4 | 5 | 12 | 11:29 | -18 | 17 |
| 20 |
|
Gainare Tottori | 21 | 5 | 2 | 14 | 17:45 | -28 | 17 |
| 21 |
|
Kataller Toyama | 21 | 3 | 5 | 13 | 16:31 | -15 | 14 |
| 22 |
|
FC Machida Zelvia | 21 | 3 | 4 | 14 | 15:32 | -17 | 13 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
