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| 22.08.2012 | 11:00 | FC Gifu | - | JEF United Chiba | 0:0 (0:0) | |
| 12:00 | Tochigi SC | - | Ehime FC | 1:0 (0:0) | ||
| 12:00 | FC Machida Zelvia | - | Gainare Tottori | 0:0 (0:0) | ||
| 12:00 | Yokohama FC | - | Mito HollyHock | 2:1 (1:1) | ||
| 12:00 | Ventforet Kofu | - | Montedio Yamagata | 0:0 (0:0) | ||
| 12:00 | Kyoto Sanga FC | - | Matsumoto Yamaga | 0:1 (0:1) | ||
| 12:00 | Fagiano Okayama | - | Giravanz Kitakyushu | 1:1 (1:1) | ||
| 12:00 | Tokushima Vortis | - | Shonan Bellmare | 0:0 (0:0) | ||
| 12:00 | Roasso Kumamoto | - | Thespakusatsu Gunma | 1:1 (1:0) | ||
| 12:00 | Oita Trinita | - | Tokyo Verdy | 2:1 (1:0) | ||
| 13:00 | Avispa Fukuoka | - | Kataller Toyama | 3:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Ventforet Kofu | 30 | 16 | 10 | 4 | 42:23 | 19 | 58 |
| 2 |
|
Kyoto Sanga FC | 30 | 17 | 4 | 9 | 43:31 | 12 | 55 |
| 3 |
|
Shonan Bellmare | 30 | 14 | 12 | 4 | 47:30 | 17 | 54 |
| 4 |
|
Oita Trinita | 30 | 16 | 6 | 8 | 45:30 | 15 | 54 |
| 5 |
|
Tokyo Verdy | 30 | 17 | 2 | 11 | 51:32 | 19 | 53 |
| 6 |
|
Montedio Yamagata | 30 | 14 | 10 | 6 | 41:29 | 12 | 52 |
| 7 |
|
JEF United Chiba | 30 | 15 | 6 | 9 | 41:20 | 21 | 51 |
| 8 |
|
Yokohama FC | 30 | 15 | 5 | 10 | 45:33 | 12 | 50 |
| 9 |
|
Tochigi SC | 30 | 14 | 7 | 9 | 35:29 | 6 | 49 |
| 10 |
|
Fagiano Okayama | 30 | 12 | 10 | 8 | 27:25 | 2 | 46 |
| 11 |
|
Mito HollyHock | 30 | 11 | 7 | 12 | 33:33 | 0 | 40 |
| 12 |
|
Giravanz Kitakyushu | 30 | 11 | 7 | 12 | 34:36 | -2 | 40 |
| 13 |
|
Matsumoto Yamaga | 30 | 10 | 10 | 10 | 26:30 | -4 | 40 |
| 14 |
|
Tokushima Vortis | 30 | 10 | 8 | 12 | 28:31 | -3 | 38 |
| 15 |
|
Avispa Fukuoka | 30 | 9 | 9 | 12 | 41:47 | -6 | 36 |
| 16 |
|
Thespakusatsu Gunma | 30 | 8 | 10 | 12 | 23:30 | -7 | 34 |
| 17 |
|
Roasso Kumamoto | 30 | 8 | 10 | 12 | 25:36 | -11 | 34 |
| 18 |
|
Ehime FC | 30 | 8 | 9 | 13 | 36:36 | 0 | 33 |
| 19 |
|
Gainare Tottori | 30 | 7 | 3 | 20 | 23:59 | -36 | 24 |
| 20 |
|
FC Machida Zelvia | 30 | 5 | 7 | 18 | 20:42 | -22 | 22 |
| 21 |
|
FC Gifu | 30 | 4 | 10 | 16 | 17:42 | -25 | 22 |
| 22 |
|
Kataller Toyama | 30 | 3 | 10 | 17 | 25:44 | -19 | 19 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
