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| 17.09.2012 | 06:00 | JEF United Chiba | - | Giravanz Kitakyushu | 0:3 (0:3) | |
| 06:00 | Yokohama FC | - | Matsumoto Yamaga | 1:1 (1:0) | ||
| 07:00 | Montedio Yamagata | - | Kyoto Sanga FC | 1:2 (0:1) | ||
| 07:00 | Fagiano Okayama | - | Shonan Bellmare | 3:1 (3:0) | ||
| 08:00 | Tokyo Verdy | - | Ehime FC | 3:0 (2:0) | ||
| 09:00 | Ventforet Kofu | - | Gainare Tottori | 1:1 (1:1) | ||
| 09:00 | Roasso Kumamoto | - | Oita Trinita | 2:1 (1:0) | ||
| 11:30 | Tokushima Vortis | - | Mito HollyHock | 1:2 (1:1) | ||
| 12:00 | FC Gifu | - | Tochigi SC | 1:0 (0:0) | ||
| 12:00 | Avispa Fukuoka | - | FC Machida Zelvia | 1:1 (1:1) | ||
| 12:30 | Thespakusatsu Gunma | - | Kataller Toyama | 0:1 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Ventforet Kofu | 34 | 19 | 11 | 4 | 48:26 | 22 | 68 |
| 2 |
|
Shonan Bellmare | 34 | 17 | 12 | 5 | 54:35 | 19 | 63 |
| 3 |
|
Oita Trinita | 34 | 17 | 7 | 10 | 49:34 | 15 | 58 |
| 4 |
|
Kyoto Sanga FC | 34 | 18 | 4 | 12 | 46:37 | 9 | 58 |
| 5 |
|
JEF United Chiba | 34 | 17 | 6 | 11 | 46:26 | 20 | 57 |
| 6 |
|
Tokyo Verdy | 34 | 18 | 3 | 13 | 55:36 | 19 | 57 |
| 7 |
|
Montedio Yamagata | 34 | 15 | 11 | 8 | 48:36 | 12 | 56 |
| 8 |
|
Yokohama FC | 34 | 16 | 6 | 12 | 49:39 | 10 | 54 |
| 9 |
|
Tochigi SC | 34 | 15 | 8 | 11 | 40:34 | 6 | 53 |
| 10 |
|
Giravanz Kitakyushu | 34 | 15 | 7 | 12 | 43:37 | 6 | 52 |
| 11 |
|
Fagiano Okayama | 34 | 13 | 12 | 9 | 32:29 | 3 | 51 |
| 12 |
|
Mito HollyHock | 34 | 14 | 7 | 13 | 39:37 | 2 | 49 |
| 13 |
|
Matsumoto Yamaga | 34 | 11 | 12 | 11 | 32:35 | -3 | 45 |
| 14 |
|
Tokushima Vortis | 34 | 11 | 10 | 13 | 35:36 | -1 | 43 |
| 15 |
|
Thespakusatsu Gunma | 34 | 10 | 10 | 14 | 26:33 | -7 | 40 |
| 16 |
|
Roasso Kumamoto | 34 | 10 | 10 | 14 | 30:41 | -11 | 40 |
| 17 |
|
Avispa Fukuoka | 34 | 9 | 12 | 13 | 46:53 | -7 | 39 |
| 18 |
|
Ehime FC | 34 | 8 | 10 | 16 | 36:41 | -5 | 34 |
| 19 |
|
FC Gifu | 34 | 6 | 11 | 17 | 20:44 | -24 | 29 |
| 20 |
|
Kataller Toyama | 34 | 6 | 10 | 18 | 29:47 | -18 | 28 |
| 21 |
|
Gainare Tottori | 34 | 8 | 4 | 22 | 26:66 | -40 | 28 |
| 22 |
|
FC Machida Zelvia | 34 | 5 | 9 | 20 | 24:51 | -27 | 24 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
