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| 20.04.2013 | 16:30 | Slovan Bratislava | - | Spartak Myjava | 1:1 (0:0) | |
| 17:30 | AS Trenčín | - | MŠK Žilina | 1:2 (1:1) | ||
| 17:30 | MFK Ružomberok | - | MFK Košice | 1:1 (0:1) | ||
| 17:30 | Zlaté Moravce | - | 1. FC Tatran Prešov | 0:0 (0:0) | ||
| 17:30 | FC Nitra | - | FK Dukla Banská Bystrica | 3:1 (2:1) | ||
| 21.04.2013 | 19:00 | FK Senica | - | Spartak Trnava | 3:2 (2:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Slovan Bratislava | 27 | 14 | 10 | 3 | 46:23 | 23 | 52 |
| 2 |
|
FK Senica | 27 | 13 | 7 | 7 | 34:25 | 9 | 46 |
| 3 |
|
MFK Košice | 27 | 11 | 9 | 7 | 35:27 | 8 | 42 |
| 4 |
|
AS Trenčín | 27 | 10 | 11 | 6 | 39:29 | 10 | 41 |
| 5 |
|
MFK Ružomberok | 27 | 10 | 8 | 9 | 30:34 | -4 | 38 |
| 6 |
|
MŠK Žilina | 27 | 7 | 14 | 6 | 28:20 | 8 | 35 |
| 7 |
|
Spartak Myjava | 27 | 8 | 9 | 10 | 34:34 | 0 | 33 |
| 8 |
|
Zlaté Moravce | 27 | 8 | 8 | 11 | 34:36 | -2 | 32 |
| 9 |
|
FK Dukla Banská Bystrica | 27 | 7 | 10 | 10 | 24:27 | -3 | 31 |
| 10 |
|
FC Nitra | 27 | 8 | 5 | 14 | 32:45 | -13 | 29 |
| 11 |
|
1. FC Tatran Prešov | 27 | 7 | 7 | 13 | 20:37 | -17 | 28 |
| 12 |
|
Spartak Trnava | 27 | 5 | 10 | 12 | 25:44 | -19 | 25 |
| Champions League Quali. | |
| Europa League Quali. | |
| Abstieg |
