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| 18.10.2016 | 15:00 | 1. FC Tatran Prešov | - | FK Poprad | 0:3 (0:1) | |
| 17:30 | MFK Ružomberok | - | AS Trenčín | 3:5 (0:0, 0:0) i.E. | ||
| 19.10.2016 | 15:00 | ŠKF Sereď | - | MŠK Žilina | 3:5 (0:0, 1:1) i.E. | |
| 15:00 | MFK Skalica | - | Spartak Myjava | 1:0 (0:0) | ||
| 15:00 | Tatran Liptovský Mikuláš | - | ŠKM Liptovský Hrádok | 2:4 (0:0, 1:1) i.E. | ||
| 15:00 | Veľké Ludince | - | Slovan Bratislava | 0:1 (0:1) | ||
| 22.11.2016 | 15:30 | MFK Zemplín Michalovce | - | FC Nitra | 3:2 (1:2) | |
| 30.11.2016 | 19:00 | FC DAC 1904 | - | Spartak Trnava | 1:0 (0:0) |
