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| 21.09.2012 | 17:30 | Slovan Bratislava | - | FC Nitra | 5:2 (4:1) | |
| 22.09.2012 | 15:00 | Spartak Myjava | - | MFK Košice | 3:1 (3:1) | |
| 17:30 | MŠK Žilina | - | 1. FC Tatran Prešov | 3:0 (1:0) | ||
| 17:30 | Spartak Trnava | - | FK Dukla Banská Bystrica | 1:0 (0:0) | ||
| 17:30 | FK Senica | - | Zlaté Moravce | 3:0 (0:0) | ||
| 17:30 | AS Trenčín | - | MFK Ružomberok | 0:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Slovan Bratislava | 10 | 6 | 2 | 2 | 17:12 | 5 | 20 |
| 2 |
|
MŠK Žilina | 10 | 4 | 5 | 1 | 16:7 | 9 | 17 |
| 3 |
|
AS Trenčín | 10 | 4 | 3 | 3 | 16:13 | 3 | 15 |
| 4 |
|
Zlaté Moravce | 10 | 4 | 2 | 4 | 15:13 | 2 | 14 |
| 5 |
|
MFK Košice | 10 | 4 | 2 | 4 | 11:13 | -2 | 14 |
| 6 |
|
FK Senica | 10 | 4 | 1 | 5 | 13:11 | 2 | 13 |
| 7 |
|
FK Dukla Banská Bystrica | 10 | 3 | 4 | 3 | 9:8 | 1 | 13 |
| 8 |
|
MFK Ružomberok | 10 | 3 | 4 | 3 | 11:11 | 0 | 13 |
| 9 |
|
FC Nitra | 10 | 3 | 3 | 4 | 14:18 | -4 | 12 |
| 10 |
|
Spartak Myjava | 10 | 3 | 2 | 5 | 13:16 | -3 | 11 |
| 11 |
|
1. FC Tatran Prešov | 10 | 3 | 2 | 5 | 7:11 | -4 | 11 |
| 12 |
|
Spartak Trnava | 10 | 2 | 4 | 4 | 8:17 | -9 | 10 |
| Champions League Quali. | |
| Europa League Quali. | |
| Abstieg |
