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| 30.09.2016 | 18:00 | Vysočina Jihlava | - | Bohemians Praha 1905 | 0:2 (0:0) | |
| 01.10.2016 | 15:30 | FK Mladá Boleslav | - | FK Dukla Praha | 1:0 (0:0) | |
| 17:00 | FC Fastav Zlín | - | FK Jablonec | 2:2 (0:1) | ||
| 17:00 | 1. FK Příbram | - | 1. FC Slovácko | 0:1 (0:0) | ||
| 20:05 | Slavia Praha | - | MFK Karviná | 1:0 (0:0) | ||
| 02.10.2016 | 14:30 | Zbrojovka Brno | - | AC Sparta Praha | 3:3 (1:2) | |
| 17:00 | Slovan Liberec | - | FK Teplice | 2:0 (0:0) | ||
| 20:00 | Viktoria Plzeň | - | FC Hradec Králové | 4:1 (3:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Viktoria Plzeň | 9 | 7 | 1 | 1 | 18:7 | 11 | 22 |
| 2 |
|
FK Mladá Boleslav | 9 | 7 | 1 | 1 | 17:6 | 11 | 22 |
| 3 |
|
FC Fastav Zlín | 9 | 6 | 3 | 0 | 19:7 | 12 | 21 |
| 4 |
|
Slavia Praha | 9 | 5 | 3 | 1 | 17:9 | 8 | 18 |
| 5 |
|
AC Sparta Praha | 9 | 4 | 4 | 1 | 16:10 | 6 | 16 |
| 6 |
|
Bohemians Praha 1905 | 9 | 4 | 1 | 4 | 10:12 | -2 | 13 |
| 7 |
|
FK Dukla Praha | 9 | 3 | 2 | 4 | 15:12 | 3 | 11 |
| 8 |
|
MFK Karviná | 9 | 3 | 2 | 4 | 11:14 | -3 | 11 |
| 9 |
|
FK Jablonec | 9 | 2 | 4 | 3 | 14:17 | -3 | 10 |
| 10 |
|
FC Hradec Králové | 9 | 3 | 1 | 5 | 9:14 | -5 | 10 |
| 11 |
|
FK Teplice | 9 | 2 | 3 | 4 | 8:10 | -2 | 9 |
| 12 |
|
Slovan Liberec | 9 | 2 | 3 | 4 | 6:9 | -3 | 9 |
| 13 |
|
1. FC Slovácko | 9 | 2 | 3 | 4 | 11:15 | -4 | 9 |
| 14 |
|
Zbrojovka Brno | 9 | 1 | 5 | 3 | 9:16 | -7 | 8 |
| 15 |
|
Vysočina Jihlava | 9 | 0 | 4 | 5 | 5:14 | -9 | 4 |
| 16 |
|
1. FK Příbram | 9 | 1 | 0 | 8 | 3:16 | -13 | 3 |
| Champions League Quali. | |
| Europa League Quali. | |
| Europa League | |
| Abstieg |
|
# FC FASTAV Zlín qualifizierte sich als Pokalsieger für die Europa League 2017/2018. |
