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| 06.10.2012 | 10:15 | FK Baník Sokolov | - | FK Ústí nad Labem | 3:0 (1:0) | |
| 10:15 | FK Pardubice | - | FK Baník Most | 1:1 (1:0) | ||
| 16:00 | 1. HFK Olomouc | - | Bohemians Praha | 1:0 (0:0) | ||
| 18:00 | SFC Opava | - | FK Varnsdorf | 3:0 (0:0) | ||
| 07.10.2012 | 15:00 | 1. SC Znojmo | - | FK MAS Táborsko | 1:0 (0:0) | |
| 16:00 | MFK Karviná | - | Viktoria Žižkov | 2:1 (2:0) | ||
| 17:00 | FC Fastav Zlín | - | FK Čáslav | 3:0 (2:0) | ||
| 17:00 | Bohemians 1905 | - | FC Graffin Vlašim | 2:3 (0:3) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. SC Znojmo | 10 | 7 | 2 | 1 | 15:6 | 9 | 23 |
| 2 |
|
Viktoria Žižkov | 10 | 7 | 1 | 2 | 15:6 | 9 | 22 |
| 3 |
|
Bohemians 1905 | 10 | 6 | 2 | 2 | 18:8 | 10 | 20 |
| 4 |
|
FK Baník Sokolov | 10 | 5 | 3 | 2 | 15:8 | 7 | 18 |
| 5 |
|
1. HFK Olomouc | 10 | 5 | 2 | 3 | 18:15 | 3 | 17 |
| 6 |
|
FK Varnsdorf | 10 | 4 | 2 | 4 | 16:12 | 4 | 14 |
| 7 |
|
FK Pardubice | 10 | 3 | 3 | 4 | 16:12 | 4 | 12 |
| 8 |
|
FC Graffin Vlašim | 10 | 3 | 3 | 4 | 12:17 | -5 | 12 |
| 9 |
|
MFK Karviná | 10 | 3 | 3 | 4 | 9:15 | -6 | 12 |
| 10 |
|
FK MAS Táborsko | 10 | 2 | 5 | 3 | 9:8 | 1 | 11 |
| 11 |
|
FC Fastav Zlín | 10 | 3 | 2 | 5 | 10:15 | -5 | 11 |
|
FK Ústí nad Labem | 10 | 3 | 2 | 5 | 10:15 | -5 | 11 | |
| 13 |
|
Bohemians Praha | 10 | 1 | 7 | 2 | 7:8 | -1 | 10 |
| 14 |
|
FK Baník Most | 10 | 2 | 4 | 4 | 11:17 | -6 | 10 |
| 15 |
|
SFC Opava | 10 | 1 | 4 | 5 | 12:23 | -11 | 7 |
| 16 |
|
FK Čáslav | 10 | 1 | 3 | 6 | 6:14 | -8 | 6 |
| Aufstieg | |
| Abstieg |
