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| 30.09.2006 | 14:00 | Tescoma Zlín | - | FK Jablonec 97 | 0:0 (0:0) | |
| 19:00 | Baník Ostrava | - | FK Marila Příbram | 1:1 (1:1) | ||
| 01.10.2006 | 17:00 | Dynamo České Budějovice | - | Viktoria Plzeň | 2:1 (2:1) | |
| 17:00 | Sigma Olomouc | - | 1. FC Slovácko | 2:1 (1:1) | ||
| 17:00 | 1. FC Brno | - | FK SIAD Most | 1:1 (1:1) | ||
| 20:15 | FK Teplice | - | FK Mladá Boleslav | 2:0 (0:0) | ||
| 02.10.2006 | 17:15 | Slavia Praha | - | AC Sparta Praha | 0:0 (0:0) | |
| 20:00 | Slovan Liberec | - | SK Kladno | 4:1 (1:0) |
| » Tabelle | Heim | Auswärts | Hinrunde | Rückrunde | 1. Halbzeit | 2. Halbzeit |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Slovan Liberec | 9 | 7 | 2 | 0 | 16:2 | 14 | 23 |
| 2 |
|
FK Mladá Boleslav | 9 | 7 | 1 | 1 | 15:4 | 11 | 22 |
| 3 |
|
AC Sparta Praha | 9 | 4 | 4 | 1 | 9:5 | 4 | 16 |
| 4 |
|
Dynamo České Budějovice | 9 | 4 | 2 | 3 | 7:9 | -2 | 14 |
| 5 |
|
Slavia Praha | 9 | 4 | 2 | 3 | 12:7 | 5 | 14 |
| 6 |
|
1. FC Brno | 9 | 3 | 5 | 1 | 5:3 | 2 | 14 |
| 7 |
|
FK Jablonec 97 | 9 | 3 | 4 | 2 | 7:7 | 0 | 13 |
| 8 |
|
FK Teplice | 9 | 3 | 3 | 3 | 14:12 | 2 | 12 |
| 9 |
|
Viktoria Plzeň | 9 | 3 | 3 | 3 | 9:10 | -1 | 12 |
| 10 |
|
Baník Ostrava | 9 | 3 | 2 | 4 | 14:13 | 1 | 11 |
| 11 |
|
FK SIAD Most | 9 | 2 | 4 | 3 | 12:14 | -2 | 10 |
| 12 |
|
Tescoma Zlín | 9 | 2 | 2 | 5 | 5:10 | -5 | 8 |
| 13 |
|
SK Kladno | 9 | 2 | 2 | 5 | 7:16 | -9 | 8 |
| 14 |
|
Sigma Olomouc | 9 | 2 | 1 | 6 | 7:15 | -8 | 7 |
| 15 |
|
FK Marila Příbram | 9 | 1 | 3 | 5 | 6:12 | -6 | 6 |
| 16 |
|
1. FC Slovácko | 9 | 1 | 2 | 6 | 6:12 | -6 | 5 |
| Champions League Quali. | |
| Europa League | |
| Abstieg |
