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| 12.05.2012 | 07:00 | Ehime FC | - | Giravanz Kitakyushu | 2:2 (1:1) | |
| 13.05.2012 | 06:00 | Thespakusatsu Gunma | - | Tochigi SC | 1:2 (1:2) | |
| 06:00 | Tokyo Verdy | - | Fagiano Okayama | 0:1 (0:0) | ||
| 06:00 | FC Machida Zelvia | - | JEF United Chiba | 1:6 (0:2) | ||
| 06:00 | Yokohama FC | - | Kataller Toyama | 3:0 (1:0) | ||
| 06:00 | Avispa Fukuoka | - | Montedio Yamagata | 1:1 (0:1) | ||
| 09:00 | Shonan Bellmare | - | Oita Trinita | 1:1 (0:1) | ||
| 09:00 | Kyoto Sanga FC | - | Tokushima Vortis | 2:1 (0:0) | ||
| 09:00 | Gainare Tottori | - | Mito HollyHock | 2:1 (1:0) | ||
| 09:00 | Roasso Kumamoto | - | Ventforet Kofu | 0:0 (0:0) | ||
| 12:00 | FC Gifu | - | Matsumoto Yamaga | 0:1 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Montedio Yamagata | 14 | 9 | 3 | 2 | 20:13 | 7 | 30 |
| 2 |
|
Shonan Bellmare | 14 | 8 | 4 | 2 | 27:18 | 9 | 28 |
| 3 |
|
Kyoto Sanga FC | 14 | 9 | 1 | 4 | 21:12 | 9 | 28 |
| 4 |
|
JEF United Chiba | 14 | 8 | 3 | 3 | 22:8 | 14 | 27 |
| 5 |
|
Oita Trinita | 14 | 7 | 4 | 3 | 21:12 | 9 | 25 |
|
Tokyo Verdy | 14 | 8 | 1 | 5 | 21:12 | 9 | 25 | |
| 7 |
|
Fagiano Okayama | 14 | 7 | 4 | 3 | 12:9 | 3 | 25 |
| 8 |
|
Mito HollyHock | 14 | 7 | 3 | 4 | 14:10 | 4 | 24 |
| 9 |
|
Ventforet Kofu | 14 | 6 | 5 | 3 | 17:13 | 4 | 23 |
| 10 |
|
Tochigi SC | 14 | 6 | 3 | 5 | 16:13 | 3 | 21 |
| 11 |
|
Ehime FC | 14 | 5 | 5 | 4 | 21:14 | 7 | 20 |
| 12 |
|
Giravanz Kitakyushu | 14 | 6 | 2 | 6 | 15:14 | 1 | 20 |
| 13 |
|
Matsumoto Yamaga | 14 | 5 | 3 | 6 | 9:13 | -4 | 18 |
| 14 |
|
Avispa Fukuoka | 14 | 4 | 5 | 5 | 21:20 | 1 | 17 |
| 15 |
|
Yokohama FC | 14 | 4 | 3 | 7 | 16:20 | -4 | 15 |
| 16 |
|
Gainare Tottori | 14 | 4 | 2 | 8 | 11:25 | -14 | 14 |
| 17 |
|
Roasso Kumamoto | 14 | 2 | 6 | 6 | 10:17 | -7 | 12 |
| 18 |
|
Thespakusatsu Gunma | 14 | 3 | 3 | 8 | 10:19 | -9 | 12 |
| 19 |
|
Tokushima Vortis | 14 | 3 | 3 | 8 | 10:20 | -10 | 12 |
| 20 |
|
FC Machida Zelvia | 14 | 3 | 2 | 9 | 13:24 | -11 | 11 |
| 21 |
|
Kataller Toyama | 14 | 2 | 4 | 8 | 13:21 | -8 | 10 |
| 22 |
|
FC Gifu | 14 | 2 | 3 | 9 | 6:19 | -13 | 9 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
