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| 06.12.2008 | 16:00 | Aldershot Town | - | Wycombe Wanderers | 3:2 (2:0) | |
| 16:00 | AFC Bournemouth | - | Chester City | 1:0 (0:0) | ||
| 16:00 | Bradford City | - | Dagenham & Redbridge | 1:1 (0:0) | ||
| 16:00 | Exeter City | - | Lincoln City | 2:1 (0:0) | ||
| 16:00 | Gillingham FC | - | Chesterfield FC | 2:1 (2:0) | ||
| 16:00 | Luton Town | - | Barnet FC | 3:1 (2:1) | ||
| 16:00 | Macclesfield Town | - | Bury FC | 1:1 (1:1) | ||
| 16:00 | Notts County | - | Morecambe FC | 1:0 (1:0) | ||
| 16:00 | Port Vale FC | - | Grimsby Town | 2:1 (1:0) | ||
| 16:00 | Shrewsbury Town | - | Rotherham United | 1:0 (0:0) | ||
| 10.02.2009 | 20:45 | Accrington Stanley | - | Brentford FC | 1:1 (0:0) | |
| 24.02.2009 | 20:45 | Darlington FC | - | Rochdale AFC | 1:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Wycombe Wanderers | 19 | 11 | 7 | 1 | 28:11 | 17 | 40 |
| 2 |
|
Shrewsbury Town | 19 | 9 | 7 | 3 | 36:16 | 20 | 34 |
| 3 |
|
Rochdale AFC | 19 | 9 | 7 | 3 | 32:20 | 12 | 34 |
| 4 |
|
Bradford City | 19 | 10 | 4 | 5 | 35:25 | 10 | 34 |
| 5 |
|
Bury FC | 19 | 9 | 5 | 5 | 29:20 | 9 | 32 |
| 6 |
|
Brentford FC | 19 | 8 | 8 | 3 | 23:14 | 9 | 32 |
| 7 |
|
Exeter City | 19 | 9 | 5 | 5 | 26:22 | 4 | 32 |
| 8 |
|
Gillingham FC | 19 | 9 | 4 | 6 | 28:27 | 1 | 31 |
| 9 |
|
Aldershot Town | 19 | 9 | 3 | 7 | 27:31 | -4 | 30 |
| 10 |
|
Dagenham & Redbridge | 19 | 8 | 4 | 7 | 37:22 | 15 | 28 |
| 11 |
|
Chesterfield FC | 19 | 6 | 5 | 8 | 32:29 | 3 | 23 |
| 12 |
|
Lincoln City | 19 | 6 | 5 | 8 | 19:21 | -2 | 23 |
| 13 |
|
Port Vale FC | 19 | 7 | 2 | 10 | 22:31 | -9 | 23 |
| 14 |
|
Darlington FC | 19 | 9 | 5 | 5 | 32:19 | 13 | 22 |
| 15 |
|
Notts County | 19 | 4 | 9 | 6 | 24:29 | -5 | 21 |
| 16 |
|
Macclesfield Town | 19 | 6 | 3 | 10 | 21:36 | -15 | 21 |
| 17 |
|
Accrington Stanley | 19 | 5 | 5 | 9 | 21:24 | -3 | 20 |
| 18 |
|
Morecambe FC | 19 | 3 | 9 | 7 | 19:28 | -9 | 18 |
| 19 |
|
Chester City | 19 | 4 | 4 | 11 | 21:36 | -15 | 16 |
| 20 |
|
Barnet FC | 19 | 3 | 5 | 11 | 20:40 | -20 | 14 |
| 21 |
|
Rotherham United | 19 | 7 | 6 | 6 | 23:22 | 1 | 10 |
| 22 |
|
Grimsby Town | 19 | 1 | 7 | 11 | 15:36 | -21 | 10 |
| 23 |
|
AFC Bournemouth | 19 | 4 | 8 | 7 | 22:29 | -7 | 3 |
| 24 |
|
Luton Town | 19 | 6 | 5 | 8 | 24:28 | -4 | -7 |
| Aufstieg | |
| Playoffs | |
| Abstieg |
|
# Luton Town bekam wegen finanzieller Unregelmäßigkeiten 30 Punkte abgezogen. # Rotherham und Bournemouth wurden wegen finanzieller Unregelmäßigkeiten 17 Punkte abgezogen. # Darlington wurden wegen finanzieller Unregelmäßigkeiten 10 Punkte abgezogen. |
