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| 22.07.2012 | 11:00 | Mito HollyHock | - | Avispa Fukuoka | 4:2 (0:1) | |
| 11:00 | Tokyo Verdy | - | Roasso Kumamoto | 2:0 (1:0) | ||
| 11:00 | Yokohama FC | - | Gainare Tottori | 3:1 (1:0) | ||
| 11:00 | Matsumoto Yamaga | - | Fagiano Okayama | 3:0 (1:0) | ||
| 11:00 | Kataller Toyama | - | Tochigi SC | 1:2 (0:0) | ||
| 11:00 | Oita Trinita | - | FC Gifu | 2:2 (1:0) | ||
| 11:30 | Shonan Bellmare | - | Montedio Yamagata | 0:0 (0:0) | ||
| 11:30 | Tokushima Vortis | - | Giravanz Kitakyushu | 1:1 (0:0) | ||
| 12:00 | Thespakusatsu Gunma | - | FC Machida Zelvia | 1:1 (0:0) | ||
| 12:00 | JEF United Chiba | - | Ventforet Kofu | 0:1 (0:1) | ||
| 12:00 | Kyoto Sanga FC | - | Ehime FC | 2:1 (1:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Tokyo Verdy | 25 | 16 | 1 | 8 | 47:25 | 22 | 49 |
| 2 |
|
Ventforet Kofu | 25 | 13 | 8 | 4 | 35:20 | 15 | 47 |
| 3 |
|
JEF United Chiba | 25 | 14 | 4 | 7 | 39:17 | 22 | 46 |
| 4 |
|
Shonan Bellmare | 25 | 12 | 10 | 3 | 42:27 | 15 | 46 |
| 5 |
|
Montedio Yamagata | 25 | 13 | 7 | 5 | 36:24 | 12 | 46 |
| 6 |
|
Oita Trinita | 25 | 13 | 6 | 6 | 36:25 | 11 | 45 |
| 7 |
|
Kyoto Sanga FC | 25 | 13 | 4 | 8 | 35:27 | 8 | 43 |
| 8 |
|
Tochigi SC | 25 | 12 | 5 | 8 | 33:26 | 7 | 41 |
| 9 |
|
Yokohama FC | 25 | 12 | 4 | 9 | 40:30 | 10 | 40 |
| 10 |
|
Mito HollyHock | 25 | 10 | 6 | 9 | 28:26 | 2 | 36 |
| 11 |
|
Fagiano Okayama | 25 | 9 | 9 | 7 | 20:22 | -2 | 36 |
| 12 |
|
Ehime FC | 25 | 8 | 8 | 9 | 32:28 | 4 | 32 |
| 13 |
|
Giravanz Kitakyushu | 25 | 9 | 5 | 11 | 27:31 | -4 | 32 |
| 14 |
|
Tokushima Vortis | 25 | 8 | 7 | 10 | 23:25 | -2 | 31 |
| 15 |
|
Matsumoto Yamaga | 25 | 8 | 7 | 10 | 21:27 | -6 | 31 |
| 16 |
|
Avispa Fukuoka | 25 | 7 | 9 | 9 | 32:35 | -3 | 30 |
| 17 |
|
Roasso Kumamoto | 25 | 7 | 8 | 10 | 21:30 | -9 | 29 |
| 18 |
|
Thespakusatsu Gunma | 25 | 7 | 7 | 11 | 17:26 | -9 | 28 |
| 19 |
|
FC Gifu | 25 | 4 | 8 | 13 | 15:35 | -20 | 20 |
| 20 |
|
Kataller Toyama | 25 | 3 | 8 | 14 | 21:37 | -16 | 17 |
| 21 |
|
Gainare Tottori | 25 | 5 | 2 | 18 | 19:53 | -34 | 17 |
| 22 |
|
FC Machida Zelvia | 25 | 3 | 5 | 17 | 16:39 | -23 | 14 |
| Aufstieg | |
| Playoffs | |
| Relegation | |
| Abstieg |
