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| 29.09.2006 | 18:30 | SpVgg Weiden | - | 1. FC Bad Kötzting | 3:0 (1:0) | |
| 19:00 | Jahn Regensburg | - | SV Heimstetten | 3:1 (0:1) | ||
| 19:00 | SC Fürstenfeldbruck | - | TSV Aindling | 1:2 (0:2) | ||
| 30.09.2006 | 15:00 | SpVgg Greuther Fürth II | - | TSV Großbardorf | 4:0 (2:0) | |
| 15:00 | SpVgg Unterhaching II | - | 1. FC Eintracht Bamberg | 1:2 (1:0) | ||
| 15:00 | SpVgg Bayern Hof | - | FC Memmingen | 0:1 (0:0) | ||
| 15:00 | Wacker Burghausen II | - | 1. SC Feucht | 0:0 (0:0) | ||
| 15:00 | VfL Frohnlach | - | Würzburger FV | 4:2 (3:0) | ||
| 16:00 | SpVgg Bayreuth | - | 1. FC Nürnberg II | 1:1 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Eintracht Bamberg | 13 | 9 | 4 | 0 | 26:14 | 12 | 31 |
| 2 |
|
SpVgg Greuther Fürth II | 12 | 8 | 3 | 1 | 28:8 | 20 | 27 |
| 3 |
|
Jahn Regensburg | 12 | 7 | 3 | 2 | 22:14 | 8 | 24 |
| 4 |
|
SpVgg Unterhaching II | 12 | 6 | 3 | 3 | 16:5 | 11 | 21 |
| 5 |
|
SpVgg Weiden | 12 | 6 | 3 | 3 | 13:11 | 2 | 21 |
| 6 |
|
TSV Aindling | 12 | 6 | 2 | 4 | 18:15 | 3 | 20 |
| 7 |
|
SpVgg Bayreuth | 13 | 5 | 5 | 3 | 12:10 | 2 | 20 |
| 8 |
|
SV Heimstetten | 12 | 6 | 1 | 5 | 17:17 | 0 | 19 |
| 9 |
|
Würzburger FV | 12 | 5 | 2 | 5 | 20:16 | 4 | 17 |
| 10 |
|
FC Memmingen | 12 | 5 | 2 | 5 | 13:15 | -2 | 17 |
| 11 |
|
TSV Großbardorf | 13 | 5 | 2 | 6 | 19:24 | -5 | 17 |
| 12 |
|
1. FC Bad Kötzting | 13 | 4 | 4 | 5 | 19:21 | -2 | 16 |
| 13 |
|
1. FC Nürnberg II | 12 | 3 | 5 | 4 | 13:16 | -3 | 14 |
| 14 |
|
VfL Frohnlach | 13 | 3 | 4 | 6 | 16:18 | -2 | 13 |
| 15 |
|
SpVgg Bayern Hof | 12 | 3 | 3 | 6 | 15:19 | -4 | 12 |
| 16 |
|
FC Ismaning | 12 | 2 | 4 | 6 | 12:20 | -8 | 10 |
| 17 |
|
SC Fürstenfeldbruck | 13 | 2 | 3 | 8 | 19:28 | -9 | 9 |
| 18 |
|
1. SC Feucht | 12 | 2 | 2 | 8 | 15:23 | -8 | 8 |
| 19 |
|
Wacker Burghausen II | 12 | 0 | 5 | 7 | 9:28 | -19 | 5 |
