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| 13.10.2006 | 19:00 | SC Fürstenfeldbruck | - | 1. FC Nürnberg II | 1:0 (0:0) | |
| 14.10.2006 | 15:00 | VfL Frohnlach | - | FC Ismaning | 2:3 (0:2) | |
| 15:00 | 1. FC Bad Kötzting | - | TSV Großbardorf | 6:1 (4:0) | ||
| 15:00 | SpVgg Weiden | - | 1. FC Eintracht Bamberg | 2:1 (0:0) | ||
| 15:00 | SpVgg Greuther Fürth II | - | FC Memmingen | 2:0 (1:0) | ||
| 15:00 | SpVgg Unterhaching II | - | 1. SC Feucht | 4:0 (2:0) | ||
| 15:00 | SpVgg Bayern Hof | - | SV Heimstetten | 3:1 (2:0) | ||
| 15:00 | Wacker Burghausen II | - | TSV Aindling | 1:1 (0:1) | ||
| 15:00 | Jahn Regensburg | - | Würzburger FV | 3:0 (1:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth II | 14 | 10 | 3 | 1 | 33:9 | 24 | 33 |
| 2 |
|
1. FC Eintracht Bamberg | 15 | 9 | 4 | 2 | 28:19 | 9 | 31 |
| 3 |
|
Jahn Regensburg | 14 | 8 | 3 | 3 | 26:16 | 10 | 27 |
| 4 |
|
SpVgg Weiden | 14 | 8 | 3 | 3 | 17:12 | 5 | 27 |
| 5 |
|
SpVgg Unterhaching II | 14 | 7 | 4 | 3 | 21:6 | 15 | 25 |
| 6 |
|
TSV Aindling | 14 | 7 | 3 | 4 | 21:17 | 4 | 24 |
| 7 |
|
SpVgg Bayreuth | 14 | 6 | 5 | 3 | 14:11 | 3 | 23 |
| 8 |
|
SV Heimstetten | 14 | 7 | 1 | 6 | 21:21 | 0 | 22 |
| 9 |
|
Würzburger FV | 14 | 6 | 2 | 6 | 21:19 | 2 | 20 |
| 10 |
|
1. FC Bad Kötzting | 14 | 5 | 4 | 5 | 25:22 | 3 | 19 |
| 11 |
|
FC Memmingen | 14 | 5 | 3 | 6 | 14:18 | -4 | 18 |
| 12 |
|
1. FC Nürnberg II | 14 | 4 | 5 | 5 | 14:17 | -3 | 17 |
| 13 |
|
TSV Großbardorf | 15 | 5 | 2 | 8 | 20:32 | -12 | 17 |
| 14 |
|
SpVgg Bayern Hof | 14 | 4 | 3 | 7 | 18:23 | -5 | 15 |
| 15 |
|
VfL Frohnlach | 15 | 3 | 4 | 8 | 18:22 | -4 | 13 |
| 16 |
|
FC Ismaning | 14 | 3 | 4 | 7 | 16:24 | -8 | 13 |
| 17 |
|
SC Fürstenfeldbruck | 15 | 3 | 3 | 9 | 20:29 | -9 | 12 |
| 18 |
|
1. SC Feucht | 14 | 3 | 2 | 9 | 18:27 | -9 | 11 |
| 19 |
|
Wacker Burghausen II | 14 | 0 | 6 | 8 | 11:32 | -21 | 6 |
