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| 13.04.2007 | 19:00 | SC Fürstenfeldbruck | - | SV Heimstetten | 1:1 (1:0) | |
| 14.04.2007 | 13:00 | Wacker Burghausen II | - | FC Memmingen | 0:5 (0:1) | |
| 14:30 | SpVgg Bayreuth | - | Würzburger FV | 2:0 (0:0) | ||
| 14:30 | Jahn Regensburg | - | 1. SC Feucht | 6:2 (4:1) | ||
| 15:00 | VfL Frohnlach | - | TSV Aindling | 0:3 (0:2) | ||
| 15:00 | SpVgg Bayern Hof | - | 1. FC Eintracht Bamberg | 4:2 (1:1) | ||
| 15:00 | SpVgg Unterhaching II | - | TSV Großbardorf | 0:1 (0:0) | ||
| 15:00 | SpVgg Greuther Fürth II | - | 1. FC Bad Kötzting | 3:1 (2:1) | ||
| 15.04.2007 | 16:00 | FC Ismaning | - | 1. FC Nürnberg II | 0:2 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Jahn Regensburg | 29 | 18 | 8 | 3 | 69:31 | 38 | 62 |
| 2 |
|
SpVgg Bayreuth | 30 | 16 | 8 | 6 | 43:27 | 16 | 56 |
| 3 |
|
SpVgg Greuther Fürth II | 29 | 15 | 8 | 6 | 50:24 | 26 | 53 |
| 4 |
|
1. FC Eintracht Bamberg | 30 | 15 | 8 | 7 | 50:40 | 10 | 53 |
| 5 |
|
SpVgg Weiden | 29 | 15 | 6 | 8 | 34:28 | 6 | 51 |
| 6 |
|
FC Memmingen | 29 | 13 | 9 | 7 | 44:28 | 16 | 48 |
| 7 |
|
TSV Aindling | 29 | 14 | 5 | 10 | 44:34 | 10 | 47 |
| 8 |
|
1. FC Nürnberg II | 29 | 13 | 8 | 8 | 39:30 | 9 | 47 |
| 9 |
|
SpVgg Unterhaching II | 29 | 11 | 9 | 9 | 38:23 | 15 | 42 |
| 10 |
|
SV Heimstetten | 29 | 11 | 7 | 11 | 41:41 | 0 | 40 |
| 11 |
|
SpVgg Bayern Hof | 29 | 11 | 7 | 11 | 43:44 | -1 | 40 |
| 12 |
|
1. FC Bad Kötzting | 30 | 10 | 9 | 11 | 47:48 | -1 | 39 |
| 13 |
|
Würzburger FV | 29 | 10 | 6 | 13 | 40:43 | -3 | 36 |
| 14 |
|
FC Ismaning | 30 | 8 | 10 | 12 | 34:43 | -9 | 34 |
| 15 |
|
TSV Großbardorf | 30 | 9 | 7 | 14 | 45:62 | -17 | 34 |
| 16 |
|
VfL Frohnlach | 30 | 8 | 5 | 17 | 33:51 | -18 | 29 |
| 17 |
|
SC Fürstenfeldbruck | 30 | 5 | 6 | 19 | 41:67 | -26 | 21 |
| 18 |
|
1. SC Feucht | 29 | 6 | 3 | 20 | 35:66 | -31 | 21 |
| 19 |
|
Wacker Burghausen II | 29 | 3 | 7 | 19 | 31:71 | -40 | 16 |
