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| 17.11.2006 | 19:30 | FC St. Pauli | - | Rot-Weiß Erfurt | 1:1 (1:1) | |
| 18.11.2006 | 14:00 | SV Wilhelmshaven | - | Wuppertaler SV | 2:1 (1:0) | |
| 14:00 | Kickers Emden | - | Dynamo Dresden | 1:0 (1:0) | ||
| 14:00 | Bor. Mönchengladbach II | - | Rot Weiss Ahlen | 2:2 (1:2) | ||
| 14:00 | 1. FC Union Berlin | - | Borussia Dortmund II | 2:0 (1:0) | ||
| 14:00 | Holstein Kiel | - | VfL Osnabrück | 2:0 (0:0) | ||
| 14:00 | Bayer Leverkusen II | - | 1. FC Magdeburg | 1:1 (1:1) | ||
| 19.11.2006 | 14:00 | Hamburger SV II | - | Fortuna Düsseldorf | 1:1 (0:0) | |
| 14:00 | Hertha BSC II | - | VfB Lübeck | 1:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 16 | 8 | 4 | 4 | 28:21 | 7 | 28 |
| 2 |
|
Wuppertaler SV | 16 | 8 | 4 | 4 | 25:18 | 7 | 28 |
| 3 |
|
Fortuna Düsseldorf | 16 | 7 | 6 | 3 | 25:18 | 7 | 27 |
| 4 |
|
Dynamo Dresden | 16 | 8 | 3 | 5 | 25:20 | 5 | 27 |
| 5 |
|
1. FC Magdeburg | 16 | 8 | 3 | 5 | 23:19 | 4 | 27 |
| 6 |
|
Rot-Weiß Erfurt | 16 | 7 | 5 | 4 | 19:15 | 4 | 26 |
| 7 |
|
Werder Bremen II | 16 | 7 | 4 | 5 | 28:22 | 6 | 25 |
| 8 |
|
1. FC Union Berlin | 16 | 7 | 3 | 6 | 23:16 | 7 | 24 |
| 9 |
|
VfB Lübeck | 16 | 7 | 3 | 6 | 20:16 | 4 | 24 |
| 10 |
|
Kickers Emden | 16 | 6 | 5 | 5 | 16:14 | 2 | 23 |
| 11 |
|
Hamburger SV II | 16 | 6 | 5 | 5 | 21:23 | -2 | 23 |
| 12 |
|
FC St. Pauli | 16 | 5 | 7 | 4 | 18:20 | -2 | 22 |
| 13 |
|
Rot Weiss Ahlen | 17 | 6 | 4 | 7 | 24:27 | -3 | 22 |
| 14 |
|
Hertha BSC II | 17 | 5 | 3 | 9 | 16:23 | -7 | 18 |
| 15 |
|
Holstein Kiel | 16 | 4 | 5 | 7 | 21:25 | -4 | 17 |
| 16 |
|
SV Wilhelmshaven | 16 | 4 | 4 | 8 | 18:24 | -6 | 16 |
| 17 |
|
Bayer Leverkusen II | 16 | 3 | 6 | 7 | 16:21 | -5 | 15 |
| 18 |
|
Borussia Dortmund II | 16 | 4 | 3 | 9 | 14:26 | -12 | 15 |
| 19 |
|
Bor. Mönchengladbach II | 16 | 2 | 5 | 9 | 15:27 | -12 | 11 |
