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| 12.05.2006 | 19:00 | TSG Hoffenheim | - | TSV 1860 München II | 0:2 (0:2) | |
| 13.05.2006 | 14:30 | FC Augsburg | - | SV Darmstadt 98 | 3:0 (1:0) | |
| 14:30 | SV Wehen-Taunusstein | - | Jahn Regensburg | 1:0 (1:0) | ||
| 14:30 | SC Pfullendorf | - | 1. FC Kaiserslautern II | 2:0 (1:0) | ||
| 14:30 | Stuttgarter Kickers | - | VfB Stuttgart II | 0:0 (0:0) | ||
| 14:30 | SV 07 Elversberg | - | 1. FC Eschborn | 4:0 (0:0) | ||
| 14:30 | TuS Koblenz | - | SpVgg Bayreuth | 2:2 (1:1) | ||
| 14.05.2006 | 15:00 | VfR Aalen | - | Eintracht Trier | 1:1 (1:0) | |
| 15:00 | Bayern München II | - | Karlsruher SC II | 3:1 (1:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC Augsburg | 32 | 21 | 7 | 4 | 63:24 | 39 | 70 |
| 2 |
|
TuS Koblenz | 32 | 16 | 12 | 4 | 47:29 | 18 | 60 |
| 3 |
|
SV Wehen-Taunusstein | 32 | 16 | 5 | 11 | 59:44 | 15 | 53 |
| 4 |
|
TSG Hoffenheim | 32 | 16 | 5 | 11 | 43:31 | 12 | 53 |
| 5 |
|
SV Darmstadt 98 | 32 | 15 | 6 | 11 | 50:41 | 9 | 51 |
| 6 |
|
VfR Aalen | 32 | 14 | 8 | 10 | 40:32 | 8 | 50 |
| 7 |
|
VfB Stuttgart II | 32 | 13 | 11 | 8 | 48:41 | 7 | 50 |
| 8 |
|
Stuttgarter Kickers | 32 | 12 | 11 | 9 | 43:35 | 8 | 47 |
| 9 |
|
SpVgg Bayreuth | 32 | 11 | 13 | 8 | 49:45 | 4 | 46 |
| 10 |
|
SV 07 Elversberg | 32 | 10 | 12 | 10 | 35:36 | -1 | 42 |
| 11 |
|
Bayern München II | 32 | 11 | 8 | 13 | 33:40 | -7 | 41 |
| 12 |
|
Karlsruher SC II | 32 | 12 | 5 | 15 | 39:47 | -8 | 41 |
| 13 |
|
SC Pfullendorf | 32 | 10 | 9 | 13 | 29:32 | -3 | 39 |
| 14 |
|
TSV 1860 München II | 32 | 9 | 10 | 13 | 37:45 | -8 | 37 |
| 15 |
|
1. FC Kaiserslautern II | 32 | 10 | 5 | 17 | 33:42 | -9 | 35 |
| 16 |
|
Eintracht Trier | 32 | 8 | 8 | 16 | 38:56 | -18 | 32 |
| 17 |
|
Jahn Regensburg | 32 | 7 | 10 | 15 | 37:46 | -9 | 31 |
| 18 |
|
1. FC Eschborn | 32 | 1 | 7 | 24 | 14:71 | -57 | 10 |
