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| 29.09.2006 | 19:00 | FC Locarno | - | FC Schaffhausen | 0:1 | |
| 19:45 | AC Bellinzona | - | FC Chiasso | 0:1 | ||
| 19:45 | Neuchâtel Xamax FC | - | BSC Young Boys | 0:3 | ||
| 30.09.2006 | 17:30 | FC Meyrin | - | FC Thun | 2:3 | |
| 17:30 | FC Wangen b.O. | - | FC Zürich | 1:4 | ||
| 17:30 | FC Wohlen | - | FC Winterthur | 1:3 | ||
| 18:00 | FC Brunnen | - | FC Wil 1900 | 0:5 | ||
| 19:00 | FC Nordstern Basel | - | FC St. Gallen | 0:4 | ||
| 19:30 | FC Lausanne-Sport | - | FC Aarau | 0:1 n.V. | ||
| 01.10.2006 | 14:30 | AC Lugano | - | FC Basel | 0:4 | |
| 14:30 | SC Kriens | - | FC Luzern | 0:4 | ||
| 14:30 | SV Lyss | - | SR Delémont | 1:3 | ||
| 15:00 | FC La Chaux-de-Fonds | - | FC Sion | 1:3 | ||
| 15:00 | Yverdon Sport FC | - | Servette FC | 3:1 i.E. | ||
| 15:30 | SC YF/Juventus Zürich | - | Grasshopper Club Zürich | 3:4 | ||
| 11.10.2006 | 19:00 | CS Romontois | - | FC Baulmes | 2:4 i.E. |
