| Champions League Qual. | Sp. | S | U | N | Tore | |||
| Zu Hause | 1 | 0 | 1 | 0 | 0 | : | 0 | |
| Auswärts | 1 | 0 | 0 | 1 | 0 | : | 1 | |
| ∑ | 2 | 0 | 1 | 1 | 0 | : | 1 | |
| Europa Conference League Qual. | Sp. | S | U | N | Tore | |||
| Zu Hause | 1 | 1 | 0 | 0 | 4 | : | 2 | |
| Auswärts | 1 | 1 | 0 | 0 | 1 | : | 0 | |
| ∑ | 2 | 2 | 0 | 0 | 5 | : | 2 | |
| GESAMT | Sp. | S | U | N | Tore | |||
| Zu Hause | 2 | 1 | 1 | 0 | 4 | : | 2 | |
| Auswärts | 2 | 1 | 0 | 1 | 1 | : | 1 | |
| Neutraler Ort | 0 | 0 | 0 | 0 | 0 | : | 0 | |
| ∑ | 4 | 2 | 1 | 1 | 5 | : | 3 | |
| Champions League Qual. | |||||
| 2011/2012 | 2. Runde | FC Flora | - | Shamrock Rovers | 0:0 (0:0) |
| 2011/2012 | 2. Runde | Shamrock Rovers | - | FC Flora | 1:0 (1:0) |
| Europa Conference League Qual. | |||||
| 2021/2022 | Playoffs | Shamrock Rovers | - | FC Flora | 0:1 (0:0) |
| 2021/2022 | Playoffs | FC Flora | - | Shamrock Rovers | 4:2 (2:1) |
|
Für Spiele, die im Elfmeterschießen entschieden wurden, geht der Spielstand nach 120 Minuten in diese Wertung ein. |
Estland 
![FC Flora [Frauen]](https://s.hs-data.com/bilder/wappen/mini/30430.gif?fallback=png "FC Flora [Frauen]"){kind=small}
![FC Flora [A-Junioren]](https://s.hs-data.com/bilder/wappen/mini/24240.gif?fallback=png "FC Flora [A-Junioren]"){kind=small}